Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics.
Identifieur interne : 000175 ( Main/Exploration ); précédent : 000174; suivant : 000176Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics.
Auteurs : Danillo O. Alvarenga [Brésil, Finlande] ; Maione W. Franco [Brésil] ; Kaarina Sivonen [Finlande] ; Marli F. Fiore [Brésil] ; Alessandro M. Varani [Brésil]Source :
- PeerJ [ 2167-8359 ] ; 2020.
Abstract
Background
Results
Leaves from
Conclusions
Leaf damage by this species is likely related to the blockage of access to sunlight by the efficient growth of cyanobacterial mats on the phyllosphere, which may hinder the photosynthetic machinery and prevent access to some essential molecules. These results reveal that the presence of cyanobacteria on leaf surfaces is not as universally beneficial as previously thought, since they may not merely provide the products of nitrogen fixation to their hosts in exchange for physical support, but in some cases also hinder regular leaf physiology leading to tissue damage.
DOI: 10.7717/peerj.9158
PubMed: 32518725
PubMed Central: PMC7261140
Affiliations:
- Brésil, Finlande
- Minas Gerais, Uusimaa, État de São Paulo
- Helsinki, São Paulo
- Université d'Helsinki, Université de São Paulo
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Alvarenga</name><affiliation wicri:level="3"><nlm:affiliation>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo</wicri:regionArea><placeName><settlement type="city">São Paulo</settlement><region type="state">État de São Paulo</region></placeName></affiliation><affiliation wicri:level="4"><nlm:affiliation>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Franco, Maione W" sort="Franco, Maione W" uniqKey="Franco M" first="Maione W" last="Franco">Maione W. Franco</name><affiliation wicri:level="2"><nlm:affiliation>Departamento de Biologia Vegetal, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Biologia Vegetal, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais</wicri:regionArea><placeName><region type="state">Minas Gerais</region></placeName></affiliation></author><author><name sortKey="Sivonen, Kaarina" sort="Sivonen, Kaarina" uniqKey="Sivonen K" first="Kaarina" last="Sivonen">Kaarina Sivonen</name><affiliation wicri:level="4"><nlm:affiliation>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland.</nlm:affiliation><country xml:lang="fr">Finlande</country><wicri:regionArea>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki</wicri:regionArea><orgName type="university">Université d'Helsinki</orgName><placeName><settlement type="city">Helsinki</settlement><region type="région" nuts="2">Uusimaa</region></placeName></affiliation></author><author><name sortKey="Fiore, Marli F" sort="Fiore, Marli F" uniqKey="Fiore M" first="Marli F" last="Fiore">Marli F. Fiore</name><affiliation wicri:level="4"><nlm:affiliation>Divisão de Produtividade Agroindustrial e Alimentos, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo (USP), Piracicaba, São Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Divisão de Produtividade Agroindustrial e Alimentos, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo (USP), Piracicaba, São Paulo</wicri:regionArea><placeName><settlement type="city">São Paulo</settlement><region type="state">État de São Paulo</region></placeName><orgName type="university">Université de São Paulo</orgName></affiliation></author><author><name sortKey="Varani, Alessandro M" sort="Varani, Alessandro M" uniqKey="Varani A" first="Alessandro M" last="Varani">Alessandro M. Varani</name><affiliation wicri:level="3"><nlm:affiliation>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo, Brazil.</nlm:affiliation><country xml:lang="fr">Brésil</country><wicri:regionArea>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo</wicri:regionArea><placeName><settlement type="city">São Paulo</settlement><region type="state">État de São Paulo</region></placeName></affiliation></author></analytic><series><title level="j">PeerJ</title><idno type="ISSN">2167-8359</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>Background</b></p><p></p></div><div type="abstract" xml:lang="en"><p><b>Results</b></p><p>Leaves from </p></div><div type="abstract" xml:lang="en"><p><b>Conclusions</b></p><p>Leaf damage by this species is likely related to the blockage of access to sunlight by the efficient growth of cyanobacterial mats on the phyllosphere, which may hinder the photosynthetic machinery and prevent access to some essential molecules. These results reveal that the presence of cyanobacteria on leaf surfaces is not as universally beneficial as previously thought, since they may not merely provide the products of nitrogen fixation to their hosts in exchange for physical support, but in some cases also hinder regular leaf physiology leading to tissue damage.</p></div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32518725</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>28</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2167-8359</ISSN><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2020</Year></PubDate></JournalIssue><Title>PeerJ</Title><ISOAbbreviation>PeerJ</ISOAbbreviation></Journal><ArticleTitle>Evaluating <i>Eucalyptus</i> leaf colonization by <i>Brasilonema octagenarum</i> (Cyanobacteria, Scytonemataceae) using <i>in planta</i> experiments and genomics.</ArticleTitle><Pagination><MedlinePgn>e9158</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.7717/peerj.9158</ELocationID><Abstract><AbstractText Label="Background" NlmCategory="UNASSIGNED"><i>Brasilonema</i> is a cyanobacterial genus found on the surface of mineral substrates and plants such as bromeliads, orchids and eucalyptus. <i>B. octagenarum</i> stands out among cyanobacteria due to causing damage to the leaves of its host in an interaction not yet observed in other cyanobacteria. Previous studies revealed that <i>B. octagenaum</i> UFV-E1 is capable of leading eucalyptus leaves to suffer internal tissue damage and necrosis by unknown mechanisms. This work aimed to investigate the effects of <i>B. octagenarum</i> UFV-E1 inoculation on <i>Eucalyptus urograndis</i> and to uncover molecular mechanisms potentially involved in leaf damage by these cyanobacteria using a comparative genomics approach.</AbstractText><AbstractText Label="Results" NlmCategory="UNASSIGNED">Leaves from <i>E. urograndis</i> saplings were exposed for 30 days to <i>B. octagenarum</i> UFV-E1, which was followed by the characterization of its genome and its comparison with the genomes of four other <i>Brasilonema</i> strains isolated from phyllosphere and the surface of mineral substrates. While UFV-E1 inoculation caused an increase in root and stem dry mass of the host plants, the sites colonized by cyanobacteria on leaves presented a significant decrease in pigmentation, showing that the cyanobacterial mats have an effect on leaf cell structure. Genomic analyses revealed that all evaluated <i>Brasilonema</i> genomes harbored genes encoding molecules possibly involved in plant-pathogen interactions, such as hydrolases targeting plant cell walls and proteins similar to known virulence factors from plant pathogens. However, sequences related to the type III secretory system and effectors were not detected, suggesting that, even if any virulence factors could be expressed in contact with their hosts, they would not have the structural means to actively reach plant cytoplasm.</AbstractText><AbstractText Label="Conclusions" NlmCategory="UNASSIGNED">Leaf damage by this species is likely related to the blockage of access to sunlight by the efficient growth of cyanobacterial mats on the phyllosphere, which may hinder the photosynthetic machinery and prevent access to some essential molecules. These results reveal that the presence of cyanobacteria on leaf surfaces is not as universally beneficial as previously thought, since they may not merely provide the products of nitrogen fixation to their hosts in exchange for physical support, but in some cases also hinder regular leaf physiology leading to tissue damage.</AbstractText><CopyrightInformation>©2020 Alvarenga et al.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Alvarenga</LastName><ForeName>Danillo O</ForeName><Initials>DO</Initials><AffiliationInfo><Affiliation>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo, Brazil.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Franco</LastName><ForeName>Maione W</ForeName><Initials>MW</Initials><AffiliationInfo><Affiliation>Departamento de Biologia Vegetal, Centro de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sivonen</LastName><ForeName>Kaarina</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Microbiology, Faculty of Agriculture and Forestry, University of Helsinki, Helsinki, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fiore</LastName><ForeName>Marli F</ForeName><Initials>MF</Initials><AffiliationInfo><Affiliation>Divisão de Produtividade Agroindustrial e Alimentos, Centro de Energia Nuclear na Agricultura, Universidade de São Paulo (USP), Piracicaba, São Paulo, Brazil.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Varani</LastName><ForeName>Alessandro M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Departamento de Tecnologia, Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (UNESP), Jaboticabal, São Paulo, Brazil.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>05</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PeerJ</MedlineTA><NlmUniqueID>101603425</NlmUniqueID><ISSNLinking>2167-8359</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cyanobacteriota</Keyword><Keyword MajorTopicYN="N">Horizontal gene transfer</Keyword><Keyword MajorTopicYN="N">Lignocellulolytic enzymes</Keyword><Keyword MajorTopicYN="N">Oxyphotobacteria</Keyword><Keyword MajorTopicYN="N">Phyllosphere</Keyword><Keyword MajorTopicYN="N">Virulence factors</Keyword></KeywordList><CoiStatement>The authors declare there are no competing interests.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>12</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>04</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>6</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>6</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>6</Month><Day>11</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32518725</ArticleId><ArticleId IdType="doi">10.7717/peerj.9158</ArticleId><ArticleId IdType="pii">9158</ArticleId><ArticleId IdType="pmc">PMC7261140</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Annu Rev Phytopathol. 2012;50:111-32</Citation><ArticleIdList><ArticleId IdType="pubmed">22559066</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2020 Jan 8;48(D1):D613-D620</Citation><ArticleIdList><ArticleId IdType="pubmed">31733065</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Sep;40(16):e126</Citation><ArticleIdList><ArticleId IdType="pubmed">22584627</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 2018 Apr;54(2):224-233</Citation><ArticleIdList><ArticleId IdType="pubmed">29377146</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2014 Mar 03;15(3):R46</Citation><ArticleIdList><ArticleId IdType="pubmed">24580807</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 2016 Sep 25;428(19):3752-75</Citation><ArticleIdList><ArticleId IdType="pubmed">27519796</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2015 Jun 15;31(12):2035-7</Citation><ArticleIdList><ArticleId IdType="pubmed">25661542</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 2008 Oct;44(5):1322-34</Citation><ArticleIdList><ArticleId IdType="pubmed">27041729</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45</Citation><ArticleIdList><ArticleId IdType="pubmed">26553804</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2014 Oct 16;10(10):e1004429</Citation><ArticleIdList><ArticleId IdType="pubmed">25329577</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2009 Dec 15;10:421</Citation><ArticleIdList><ArticleId IdType="pubmed">20003500</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2014 Jan;15(1):58-66</Citation><ArticleIdList><ArticleId IdType="pubmed">23937726</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2004 Jan;17(1):43-54</Citation><ArticleIdList><ArticleId IdType="pubmed">14714867</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 Mar 20;10(3):e0120627</Citation><ArticleIdList><ArticleId IdType="pubmed">25793615</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2015 Jul 02;5:11831</Citation><ArticleIdList><ArticleId IdType="pubmed">26134974</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiol Res. 2015 Nov;180:11-22</Citation><ArticleIdList><ArticleId IdType="pubmed">26505307</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14</Citation><ArticleIdList><ArticleId IdType="pubmed">24293654</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Aug 19;44(14):6614-24</Citation><ArticleIdList><ArticleId IdType="pubmed">27342282</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2012 Feb 15;28(4):464-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22199388</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2015 Feb 10;5:8365</Citation><ArticleIdList><ArticleId IdType="pubmed">25666585</ArticleId></ArticleIdList></Reference><Reference><Citation>PeerJ. 2015 May 28;3:e985</Citation><ArticleIdList><ArticleId IdType="pubmed">26038737</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2012 Sep;13(7):690-703</Citation><ArticleIdList><ArticleId IdType="pubmed">22257308</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Apr;30(4):772-80</Citation><ArticleIdList><ArticleId IdType="pubmed">23329690</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2013 Nov 1;29(21):2669-77</Citation><ArticleIdList><ArticleId IdType="pubmed">23990416</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4161-9</Citation><ArticleIdList><ArticleId IdType="pubmed">27402745</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 Aug 1;30(15):2114-20</Citation><ArticleIdList><ArticleId IdType="pubmed">24695404</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation><ArticleIdList><ArticleId IdType="pubmed">24451623</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2018 Jul 2;46(W1):W71-W75</Citation><ArticleIdList><ArticleId IdType="pubmed">29788377</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2008 Jun;36(10):3420-35</Citation><ArticleIdList><ArticleId IdType="pubmed">18445632</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2017 Jun;18(5):734-745</Citation><ArticleIdList><ArticleId IdType="pubmed">27226224</ArticleId></ArticleIdList></Reference><Reference><Citation>Appl Environ Microbiol. 2014 Nov;80(21):6739-49</Citation><ArticleIdList><ArticleId IdType="pubmed">25172854</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2013 Oct;26(10):1131-7</Citation><ArticleIdList><ArticleId IdType="pubmed">23819805</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2010 Oct 1;26(19):2460-1</Citation><ArticleIdList><ArticleId IdType="pubmed">20709691</ArticleId></ArticleIdList></Reference><Reference><Citation>Bacteriol Rev. 1971 Jun;35(2):171-205</Citation><ArticleIdList><ArticleId IdType="pubmed">4998365</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2001 Apr;14(4):580-4</Citation><ArticleIdList><ArticleId IdType="pubmed">11310747</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2018 Apr;19(4):922-934</Citation><ArticleIdList><ArticleId IdType="pubmed">28675630</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 2006 Apr 28;358(2):372-86</Citation><ArticleIdList><ArticleId IdType="pubmed">16497329</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 2012 Oct;48(5):1178-86</Citation><ArticleIdList><ArticleId IdType="pubmed">27011277</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Microbiol. 2017 Apr 25;8:515</Citation><ArticleIdList><ArticleId IdType="pubmed">28487674</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Ecol. 2014 Dec;90(3):895-907</Citation><ArticleIdList><ArticleId IdType="pubmed">25331301</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2007 Apr;39(4):561-5</Citation><ArticleIdList><ArticleId IdType="pubmed">17353894</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 Apr 09;10(4):e0111108</Citation><ArticleIdList><ArticleId IdType="pubmed">25856162</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Jun;30(6):1258-62</Citation><ArticleIdList><ArticleId IdType="pubmed">23519313</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jan 4;44(D1):D669-74</Citation><ArticleIdList><ArticleId IdType="pubmed">26590402</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2006 Sep 15;22(18):2196-203</Citation><ArticleIdList><ArticleId IdType="pubmed">16837528</ArticleId></ArticleIdList></Reference><Reference><Citation>Antonie Van Leeuwenhoek. 2011 Oct;100(3):471-5</Citation><ArticleIdList><ArticleId IdType="pubmed">21674231</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2017 Nov 1;33(21):3340-3347</Citation><ArticleIdList><ArticleId IdType="pubmed">29077810</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2015 Jul 1;43(W1):W78-84</Citation><ArticleIdList><ArticleId IdType="pubmed">25964301</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Mol Sci. 2014 Jun 10;15(6):10215-32</Citation><ArticleIdList><ArticleId IdType="pubmed">24918285</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2012 Dec;40(22):e174</Citation><ArticleIdList><ArticleId IdType="pubmed">22904081</ArticleId></ArticleIdList></Reference><Reference><Citation>J Comput Biol. 2012 May;19(5):455-77</Citation><ArticleIdList><ArticleId IdType="pubmed">22506599</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 2018;1704:213-242</Citation><ArticleIdList><ArticleId IdType="pubmed">29277867</ArticleId></ArticleIdList></Reference><Reference><Citation>Antonie Van Leeuwenhoek. 2017 Oct;110(10):1281-1286</Citation><ArticleIdList><ArticleId IdType="pubmed">28204908</ArticleId></ArticleIdList></Reference><Reference><Citation>Mob Genet Elements. 2011 May;1(1):55-65</Citation><ArticleIdList><ArticleId IdType="pubmed">22016845</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2015 Jul;25(7):1043-55</Citation><ArticleIdList><ArticleId IdType="pubmed">25977477</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2005 Mar 1;6(2):125-38</Citation><ArticleIdList><ArticleId IdType="pubmed">20565644</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2007 Jul;35(Web Server issue):W429-32</Citation><ArticleIdList><ArticleId IdType="pubmed">17483518</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Microbiol. 2015 Oct 22;15:223</Citation><ArticleIdList><ArticleId IdType="pubmed">26490537</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Microbe Interact. 2011 Feb;24(2):163-71</Citation><ArticleIdList><ArticleId IdType="pubmed">21043575</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2014 Dec;15(9):940-7</Citation><ArticleIdList><ArticleId IdType="pubmed">24754446</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Res. 2014 Aug;24(8):1384-95</Citation><ArticleIdList><ArticleId IdType="pubmed">24755901</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2008 Aug 07;9:333</Citation><ArticleIdList><ArticleId IdType="pubmed">18687122</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 2012;859:91-103</Citation><ArticleIdList><ArticleId IdType="pubmed">22367867</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006 Jan 1;34(Database issue):D32-6</Citation><ArticleIdList><ArticleId IdType="pubmed">16381877</ArticleId></ArticleIdList></Reference><Reference><Citation>J Phycol. 1968 Mar;4(1):1-4</Citation><ArticleIdList><ArticleId IdType="pubmed">27067764</ArticleId></ArticleIdList></Reference><Reference><Citation>PeerJ. 2015 Aug 27;3:e1165</Citation><ArticleIdList><ArticleId IdType="pubmed">26336640</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93</Citation><ArticleIdList><ArticleId IdType="pubmed">26582926</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Brésil</li><li>Finlande</li></country><region><li>Minas Gerais</li><li>Uusimaa</li><li>État de São Paulo</li></region><settlement><li>Helsinki</li><li>São Paulo</li></settlement><orgName><li>Université d'Helsinki</li><li>Université de São Paulo</li></orgName></list><tree><country name="Brésil"><region name="État de São Paulo"><name sortKey="Alvarenga, Danillo O" sort="Alvarenga, Danillo O" uniqKey="Alvarenga D" first="Danillo O" last="Alvarenga">Danillo O. Alvarenga</name></region><name sortKey="Fiore, Marli F" sort="Fiore, Marli F" uniqKey="Fiore M" first="Marli F" last="Fiore">Marli F. Fiore</name><name sortKey="Franco, Maione W" sort="Franco, Maione W" uniqKey="Franco M" first="Maione W" last="Franco">Maione W. Franco</name><name sortKey="Varani, Alessandro M" sort="Varani, Alessandro M" uniqKey="Varani A" first="Alessandro M" last="Varani">Alessandro M. Varani</name></country><country name="Finlande"><region name="Uusimaa"><name sortKey="Alvarenga, Danillo O" sort="Alvarenga, Danillo O" uniqKey="Alvarenga D" first="Danillo O" last="Alvarenga">Danillo O. Alvarenga</name></region><name sortKey="Sivonen, Kaarina" sort="Sivonen, Kaarina" uniqKey="Sivonen K" first="Kaarina" last="Sivonen">Kaarina Sivonen</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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